Package index
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dsaidemenu() - The main menu for the DSAIDE package
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flu1918data - 1918 Influenza mortality data
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generate_documentation() - A helper function which processes and displays the documentation part for each app
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generate_fctcall() - A helper function that produces a call to a simulator function for specific settings
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generate_ggplot() - A helper function that takes simulation results and produces ggplot plots
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generate_plotly() - A helper function that takes simulation results and produces plotly plots
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generate_shinyinput() - A helper function that takes a model and generates shiny UI elements
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generate_text() - A helper function that takes result from the simulators and produces text output
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norodata - Cases of norovirus during an outbreak
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run_model() - A function that runs an app for specific settings and processes results for plot and text generation
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simulate_Characteristics_of_ID_ode() - Characteristics of ID
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simulate_Complex_ID_Control_ode() - Complex ID Control
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simulate_directtransmission_ode() - Simulation of a compartmental infectious disease transmission model illustrating different types of direct transmission
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simulate_Drug_Resistance_Evolution_stochastic() - Drug Resistance Evolution
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simulate_Environmental_Transmission_model_ode() - Environmental Transmission model
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simulate_flu_fit() - Fitting a SIR-type model to flu data
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simulate_Host_Heterogeneity_Model_ode() - Host Heterogeneity Model
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simulate_idcontrolmultigroup_ode() - Simulation of a compartmental infectious disease transmission model with 3 types of hosts and intervention
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simulate_idcontrolmultioutbreak_ode() - Simulation of a compartmental infectious disease transmission model to study the reproductive number
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simulate_idpatterns_ode() - Simulation of a compartmental infectious disease transmission model including seasonality
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simulate_idsurveillance_ode() - Simulation of a compartmental infectious disease transmission model illustrating the impact of ID surveillance
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simulate_idvaccine_ode() - Simulation of a compartmental infectious disease transmission model to study the reproductive number
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simulate_multipathogen_ode() - Simulation of a compartmental infectious disease transmission model with 2 types of pathogens
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simulate_noro_fit() - Fitting a simple SIR type model to norovirus outbreak data
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simulate_SEIRSd_model_stochastic() - SEIRSd model
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simulate_SIRSd_model_ode() - SIRSd model
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simulate_SIRSd_model_stochastic() - SIRSd model
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simulate_SIR_modelexploration() - Simulation to illustrate parameter scan of the basic SIR model with births and deaths #'
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simulate_SIR_model_discrete() - SIR model
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simulate_SIR_model_ode() - SIR model
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simulate_SIR_usanalysis() - Simulation to illustrate uncertainty and sensitivity analysis
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simulate_Vector_transmission_model_ode() - Vector transmission model