Package index • DSAIRM

All functions

check_simresults(): A function that checks if a call to simulation function worked
dsairmmenu(): The main menu for the DSAIRM package
generate_documentation(): A helper function which processes and displays the documentation part for each app
generate_fctcall(): A helper function that produces a call to a simulator function for specific settings
generate_ggplot(): A helper function that takes simulation results and produces ggplot plots
generate_modelsettings(): A function to parse modelsettings for simulation runs
generate_plotly(): A helper function that takes simulation results and produces plotly plots
generate_shinyinput(): A helper function that takes a model and generates shiny UI elements
generate_text(): A helper function that takes result from the simulators and produces text output
hayden96flu: Influenza virus load data
run_model(): A function that runs an app for specific settings and processes results for plot and text generation
schirm20strep: Streptococcus pneumoniae infection data
simulate_acutevirusir_ode(): Acute Virus Infection and IR Model
simulate_bacteria_fit(): Fitting a simple bacteria infection models to Streptococcus pneumoniae infection data
simulate_basicbacteria_discrete(): Basic Bacteria model - discrete
simulate_basicbacteria_modelexploration(): Simulation to illustrate parameter scan of the basic bacteria model #'
simulate_basicbacteria_ode(): Basic Bacteria model - ODE
simulate_basicvirus_fit(): Fitting a simple viral infection models to influenza data
simulate_basicvirus_modelexploration(): Simulation to illustrate parameter scan of the basic virus model #'
simulate_basicvirus_ode(): Basic Virus Model
simulate_basicvirus_stochastic(): Basic Virus Model
simulate_chronicvirusir_ode(): Chronic Virus Infection and IR Model
simulate_confint_fit(): Fit a simple viral infection model and compute confidence intervals
simulate_drugresistance_stochastic(): Stochastic simulation of a compartmental acute virus infection model with treatment and drug resistant strain
simulate_extendedbacteria_ode(): Extended Bacteria model - ODE
simulate_fludrug_fit(): Fitting a simple viral infection model with 2 types of drug mechanisms to influenza data
simulate_modelcomparison_fit(): Fitting 2 simple viral infection models to influenza data
simulate_modelvariants_ode(): Simulation of a viral infection model with immune response The simulation illustrates different alternative models.
simulate_pkpdmodel_ode(): PkPd Virus model
simulate_usanalysis(): Simulation to illustrate uncertainty and sensitivity analysis
simulate_virusandir_ode(): Simulation of a viral infection model with an immune response
simulate_virusandtx_ode(): Simulation of a basic viral infection model with drug treatment